Resource StructureDefinition/FHIR Server from package cce.fhir.full#0.2.0 (141 ms)
Resources that use this resource
Resources that this resource uses
Source
{
"resourceType" : "StructureDefinition",
"url" : "https://www.cancercoreeurope.eu/fhir/StructureDefinition/cce-core-Observation-GeneticVariant",
"version" : "0.0.1",
"name" : "GeneticVariant",
"status" : "draft",
"description" : "Data elements for recording molecular markers in the CCE",
"fhirVersion" : "4.0.1",
"kind" : "resource",
"abstract" : false,
"type" : "Observation",
"baseDefinition" : "http://hl7.org/fhir/StructureDefinition/Observation",
"derivation" : "constraint",
"differential" : {
"element" : [
{
"id" : "Observation.status",
"path" : "Observation.status",
"mustSupport" : true
},
{
"id" : "Observation.category.coding.system",
"path" : "Observation.category.coding.system",
"min" : 1,
"fixedUri" : "http://hl7.org/fhir/observation-category"
},
{
"id" : "Observation.category.coding.code",
"path" : "Observation.category.coding.code",
"min" : 1,
"fixedCode" : "laboratory"
},
{
"id" : "Observation.code",
"path" : "Observation.code",
"short" : "Name of the molecular marker",
"definition" : "Name of the molecular marker",
"mustSupport" : true
},
{
"id" : "Observation.code.coding.system",
"path" : "Observation.code.coding.system",
"min" : 1,
"fixedUri" : "http://loinc.org",
"mustSupport" : true
},
{
"id" : "Observation.code.coding.code",
"path" : "Observation.code.coding.code",
"min" : 1,
"fixedCode" : "69548-6",
"mustSupport" : true
},
{
"id" : "Observation.subject",
"path" : "Observation.subject",
"min" : 1,
"type" : [
{
"code" : "Reference",
"targetProfile" : [
"https://www.cancercoreeurope.eu/fhir/StructureDefinition/cce-core-Patient-Patient",
"https://www.cancercoreeurope.eu/fhir/StructureDefinition/cce-core-Patient-Pseudonym"
]
}
],
"mustSupport" : true
},
{
"id" : "Observation.focus",
"path" : "Observation.focus",
"type" : [
{
"code" : "Reference",
"targetProfile" : [
"http://hl7.org/fhir/StructureDefinition/Resource",
"https://www.cancercoreeurope.eu/fhir/StructureDefinition/cce-core-Condition-Primarydiagnosis"
]
}
],
"mustSupport" : true
},
{
"id" : "Observation.encounter",
"path" : "Observation.encounter",
"type" : [
{
"code" : "Reference",
"targetProfile" : [
"https://www.cancercoreeurope.eu/fhir/StructureDefinition/cce-core-Encounter-Fall"
]
}
]
},
{
"id" : "Observation.effective[x]",
"path" : "Observation.effective[x]",
"short" : "Date of Data collection",
"definition" : "Date of data collection of the molecular marker",
"type" : [
{
"code" : "dateTime"
}
],
"mustSupport" : true,
"mapping" : [
{
"identity" : "ISO-11179",
"map" : "urn:dktk:dataelement:1:3",
"comment" : "urn:dktk:dataelement:1:3"
}
]
},
{
"id" : "Observation.value[x]",
"path" : "Observation.value[x]",
"short" : "Status of the molecular marker",
"definition" : "Condition or status of the molecular marker",
"min" : 1,
"type" : [
{
"code" : "CodeableConcept"
}
],
"mustSupport" : true,
"binding" : {
"strength" : "extensible",
"description" : "Genetic Variant expression",
"valueSet" : "https://www.cancercoreeurope.eu/fhir/core/ValueSet/GeneticVariantVS"
}
},
{
"id" : "Observation.value[x].coding.system",
"path" : "Observation.value[x].coding.system",
"mustSupport" : true
},
{
"id" : "Observation.value[x].coding.code",
"path" : "Observation.value[x].coding.code",
"short" : "Status of the molecular marker",
"definition" : "Condition or status of the molecular marker",
"min" : 1,
"mustSupport" : true,
"mapping" : [
{
"identity" : "ISO-11179",
"map" : "urn:dktk:dataelement:3:2",
"comment" : "urn:dktk:dataelement:3:2"
}
]
},
{
"id" : "Observation.value[x].text",
"path" : "Observation.value[x].text",
"mustSupport" : true,
"mapping" : [
{
"identity" : "ISO-11179",
"map" : "urn:dktk:dataelement:4:3",
"comment" : "urn:dktk:dataelement:4:3"
}
]
},
{
"id" : "Observation.specimen",
"path" : "Observation.specimen",
"type" : [
{
"code" : "Reference",
"targetProfile" : [
"https://fhir.bbmri.de/StructureDefinition/Specimen"
]
}
]
},
{
"id" : "Observation.specimen.reference",
"path" : "Observation.specimen.reference",
"min" : 1
},
{
"id" : "Observation.component",
"path" : "Observation.component",
"slicing" : {
"discriminator" : [
{
"type" : "pattern",
"path" : "code"
}
],
"description" : "Slice based on the component.code pattern",
"rules" : "open"
}
},
{
"id" : "Observation.component:GeneNomenclature",
"path" : "Observation.component",
"sliceName" : "GeneNomenclature",
"short" : "Gene Name",
"definition" : "Name of the molecular marker according to HGNC or own name if required",
"max" : "1",
"mustSupport" : true
},
{
"id" : "Observation.component:GeneNomenclature.code",
"path" : "Observation.component.code",
"patternCodeableConcept" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "48018-6"
}
]
},
"mustSupport" : true
},
{
"id" : "Observation.component:GeneNomenclature.value[x]",
"path" : "Observation.component.value[x]",
"min" : 1,
"type" : [
{
"code" : "CodeableConcept"
}
],
"mustSupport" : true,
"binding" : {
"strength" : "extensible",
"description" : "HGNC",
"valueSet" : "https://www.cancercoreeurope.eu/fhir/core/ValueSet/GeneNomenclatureVS"
},
"mapping" : [
{
"identity" : "ISO-11179",
"map" : "urn:dktk:dataelement:2:2",
"comment" : "urn:dktk:dataelement:2:2"
}
]
},
{
"id" : "Observation.component:Amino-acid-change",
"path" : "Observation.component",
"sliceName" : "Amino-acid-change",
"mustSupport" : true
},
{
"id" : "Observation.component:Amino-acid-change.code",
"path" : "Observation.component.code",
"patternCodeableConcept" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "48005-3"
}
]
}
},
{
"id" : "Observation.component:Amino-acid-change.value[x]",
"path" : "Observation.component.value[x]",
"min" : 1,
"type" : [
{
"code" : "string"
}
]
},
{
"id" : "Observation.component:DNA-change",
"path" : "Observation.component",
"sliceName" : "DNA-change",
"max" : "1",
"mustSupport" : true
},
{
"id" : "Observation.component:DNA-change.code",
"path" : "Observation.component.code",
"patternCodeableConcept" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "81290-9"
}
]
}
},
{
"id" : "Observation.component:DNA-change.value[x]",
"path" : "Observation.component.value[x]",
"min" : 1,
"type" : [
{
"code" : "string"
}
]
},
{
"id" : "Observation.component:RefSeq-NCBI",
"path" : "Observation.component",
"sliceName" : "RefSeq-NCBI",
"max" : "1",
"mustSupport" : true
},
{
"id" : "Observation.component:RefSeq-NCBI.code",
"path" : "Observation.component.code",
"patternCodeableConcept" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "81248-7"
}
]
}
},
{
"id" : "Observation.component:RefSeq-NCBI.value[x]",
"path" : "Observation.component.value[x]",
"min" : 1,
"type" : [
{
"code" : "string"
}
]
},
{
"id" : "Observation.component:Ensembl-ID",
"path" : "Observation.component",
"sliceName" : "Ensembl-ID",
"max" : "1",
"mustSupport" : true
},
{
"id" : "Observation.component:Ensembl-ID.code",
"path" : "Observation.component.code",
"patternCodeableConcept" : {
"coding" : [
{
"system" : "http://loinc.org",
"code" : "81249-5"
}
]
}
},
{
"id" : "Observation.component:Ensembl-ID.value[x]",
"path" : "Observation.component.value[x]",
"min" : 1,
"type" : [
{
"code" : "string"
}
]
}
]
},
"text" : {
}
}
XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.
FHIR